TypeTaxonScript: sugarifying and enhancing data structures in biological systematics and biodiversity research.

Object-oriented programming (OOP) embodies a software development paradigm grounded in representing real-world entities as objects, facilitating a more efficient and structured modelling approach. In this article, we explore the synergy between OOP principles and the TypeScript (TS) programming language to create a JSON-formatted database designed for storing arrays of biological features. This fusion of technologies fosters a controlled and modular code script, streamlining the integration, manipulation, expansion, and analysis of biological data, all while enhancing syntax for improved human readability, such as through the use of dot notation. We advocate for biologists to embrace Git technology, akin to the practices of programmers and coders, for initiating versioned and collaborative projects. Leveraging the widely accessible and acclaimed IDE, Visual Studio Code, provides an additional advantage. Not only does it support running a Node.js environment, which is essential for running TS, but it also efficiently manages GitHub versioning. We provide a use case involving taxonomic data structure, focusing on angiosperm legume plants. This method is characterized by its simplicity, as the tools employed are both fully accessible and free of charge, and it is widely adopted by communities of professional programmers. Moreover, we are dedicated to facilitating practical implementation and comprehension through a comprehensive tutorial, a readily available pre-built database at GitHub, and a new package at npm.

Systematics of Ditaxinae and Related Lineages within the Subfamily Acalyphoideae (Euphorbiaceae) Based on Molecular Phylogenetics.

The subtribe Ditaxinae in the plant family Euphorbiaceae is composed of five genera (Argythamnia, Caperonia, Chiropetalum, Ditaxis and Philyra) and approximately 120 species of perennial herbs (rarely annual) to treelets. The subtribe is distributed throughout the Americas, with the exception of Caperonia, which also occurs in tropical Africa and Madagascar. Under the current classification, Ditaxinae includes genera with a questionable morphology-based taxonomy, especially Argythamnia, Chiropetalum and Ditaxis. Moreover, phylogenetic relationships among genera are largely unexplored, with previous works sampling <10% of taxa, showing Ditaxinae as paraphyletic. In this study, we inferred the phylogenetic relationships within Ditaxinae and related taxa using a dataset of nuclear (ETS, ITS) and plastid (petD, trnLF, trnTL) DNA sequences and a wide taxon sampling (60%). We confirmed the paraphyly of Ditaxinae and Ditaxis, both with high support. Following our phylogenetic results, we combined Ditaxis in Argythamnia and upgraded Ditaxinae to the tribe level (Ditaxeae). We also established and described the tribe Caperonieae based on Caperonia, and transferred Philyra to the tribe Adelieae, along with Adelia, Garciadelia, Lasiocroton and Leucocroton. Finally, we discuss the main morphological synapomorphies for the genera and tribes and provide a taxonomic treatment, including all species recognized under each genus.

Untangling inflorescences in Miconieae (Melastomataceae): development, typology, and the systematic and evolutionary implications.

This study aimed to describe the origin, position, development and typology of inflorescences in Miconieae through ontogenetic and morphological analyses using light microscopy. We observed three morphological character states: terminal, pseudo-axillary and axillary; and two ontogenetic states: terminal and axillary. The terminal and pseudoaxillary inflorescences originate from terminal reproductive meristems. Pseudoaxillary inflorescences result from unequal development of vegetative meristems which flank the terminal flowering unit, whereas in terminal inflorescences, both vegetative meristems develop equally. In axillary inflorescences, the terminal reproductive meristem is not involved, while axillary inflorescences originate from reproductive axillary meristems. The inflorescences range from heterocladic and thyrsoid to simpler types, such as botryoid and triad. Such characteristics can also be seen in paracladia, particularly those most distal. The terminal inflorescence is observed in all clades of Miconieae, and pseudoaxillary and axillary inflorescences should be apomorphic states in the tribe and derived from the terminal condition.

Typifications of some species names in Anthurium section Pachyneurium (Araceae).

During a taxonomic study of Anthurium sect. Pachyneurium, it was found that the names of four species required typification. Verification of the protologues and cited collections is discussed and typifications are proposed as follows: the illustration Schott Icones Aroideae No. 465 is designated as the neotype of A. affine Schott. A lectotype is designated for A. bonplandii G.S.Bunting since the holotype, cited in the protologue at MY, was not found there. An epitype is selected for A. solitarium Schott because the lectotype illustration of J.M.C. Vellozo (Flora Fluminensis t. 123) lacks sufficient detail to determine it unambiguously to species in A. sect. Pachyneurium. A lectotype is selected for A. glaziovii Hook.f., a synonym of A. solitarium.

Using online databases to produce comprehensive accounts of the vascular plants from the Brazilian protected areas: The Parque Nacional do Itatiaia as a case study.

BACKGROUND: Brazil is one of the most biodiverse countries in the world, with about 37,000 species of land plants. Part of this biodiversity is within protected areas. The development of online databases in the last years greatly improved the available biodiversity data. However, the existing databases do not provide information about the protected areas in which individual plant species occur. The lack of such information is a crucial gap for conservation actions. This study aimed to show how the information captured from online databases, cleaned by a protocol and verified by taxonomists allowed us to obtain a comprehensive list of the vascular plant species from the "Parque Nacional do Itatiaia", the first national park founded in Brazil. All existing records in the online database JABOT (15,100 vouchers) were downloaded, resulting in 11,783 vouchers identified at the species level. Overall, we documented 2,316 species belonging to 176 families and 837 genera of vascular plants in the "Parque Nacional do Itatiaia". Considering the whole vascular flora, 2,238 species are native and 78 are non-native. NEW INFORMATION: The "Parque Nacional do Itatiaia" houses 13% of the angiosperm and 37% of the fern species known from the Brazilian Atlantic Forest. Amongst these species, 82 have been cited as threatened, following IUCN categories (CR, EN or VU), seven are data deficient (DD) and 15 have been classified as a conservation priority, because they are only known from a single specimen collected before 1969.

Melastomataceae em formações costeiras de restingas no Pará, Brasil / Melastomataceae in coastal formation of restinga in Pará, Brazil

Sandy coastal vegetation ("restinga") is composed by a complex of plant communities occurring on quaternary plains under marine influence. The Brazilian Amazon biome is the second richest in Melastomataceae in the country. This family is represented by 47 genera and 487 species. This study aimed to know the diversity of Melastomataceae in different vegetations in the landscape of coastal marshes. The survey was conducted in the herbaria IAN (Herbلrio da Empresa Brasileira de Pesquisas Agropecuلrias) and MG (Herbلrio do Museu Paraense Emيlio Goeldi), and field work in the cities of Bragança, Maracanم and Marapanim, all of them in the North Brazilian State of Parل. A taxonomic treatment with descriptions, illustrations, geographical data, identification key for the recognition of species and comments on morphological characteristics are presented. The family is represented in sandy coastal of Parل by the following species: Acisanthera bivalvis, A. crassipes, Comolia villosa, Miconia alata, Mouriri brachyantera, M. guianensis, Nepsera aquatica, Pterolepis trichotoma, Rhynchanthera serrulata, and Tibouchina aspera. These species occur mainly in herbaceous marshes, dunes, fields between dunes, open shrubby fields, and sandy coastal forests. Miconia alata is a new record for the sandy coastal environment in Parل. The study revealed that the sandy coastal vegetation of the municipalities Maracanم and Marapanim concentrate 80% of the studied species. In this study we recognize that none of these species can be characterized as endemic, as they are all found in other ecosystems or vegetation formations in Brazil.

Restingas são ambientes constituídos de um complexo de comunidades de plantas ocorrendo sobre planícies arenosas costeiras quaternárias de influência marinha. A Amazônia brasileira é o segundo bioma de maior riqueza de Melastomataceae no país, o qual está representado por 47 gêneros e 487 espécies. O presente trabalho objetivou conhecer a diversidade de Melastomataceae nas diferentes formações vegetacionais que compõem a paisagem das restingas no Pará. Foi realizado levantamento de coleções herborizadas nos herbários IAN (Herbário da Empresa Brasileira de Pesquisas Agropecuárias) e MG (Herbário do Museu Paraense Emílio Goeldi), e coletas nos municípios de Bragança, Maracanã e Marapanim. Apresenta-se o tratamento taxonômico com descrições, ilustrações, dados de distribuição geográfica, chave de identificação para as espécies e comentários sobre particularidades morfológicas. A família está representada por 10 espécies nas restingas do Pará, a conhecer: Acisanthera bivalvis, A. crassipes, Comolia villosa, Miconia alata, Mouriri brachyantera, M. guianensis, Nepsera aquatica, Pterolepis trichotoma, Rhynchanthera serrulata e Tibouchina aspera. Tais espécies ocorrem pricipalmente em Brejos Herbáceos, Campos entre Dunas, Dunas, Campos Arbustivos Abertos e Matas de Restinga. Miconia alata representa um novo registro para o ambiente de restinga no Pará. As restingas dos municípios de Maracanã e Marapanim concentram 80% das espécies estudadas. Através deste trabalho foi possível reconhecer que nenhuma delas pode ser caracterizada como exclusiva, pois todas são encontradas em outros ecossistemas ou formações vegetacionais do país.